1M1P P21 crystal structure of the tetraheme cytochrome c3 from Shewanella oneidensis MR1 date
authors Leys, D., Meyer, T.E., Tsapin, A.I., Nealson, K.H., Cusanovich, M.A., Beeumen, J.J.Van.
compound source
symmetry
R_factor
R_Free 0.21148
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.55
ligand HEC, SO4 enzyme
related structures by homologous chain: 1M1R
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • electron transfer activity


    • Primary referenceCrystal structures at atomic resolution reveal the novel concept of "electron-harvesting" as a role for the small tetraheme cytochrome c., Leys D, Meyer TE, Tsapin AS, Nealson KH, Cusanovich MA, Van Beeumen JJ, J Biol Chem 2002 Sep 20;277(38):35703-11. PMID:12080059
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (1m1p.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (1m1p.pdb2.gz) 23 Kb
  • Biological Unit Coordinates (1m1p.pdb3.gz) 23 Kb
  • Biological Unit Coordinates (1m1p.pdb4.gz) 23 Kb
  • Biological Unit Coordinates (1m1p.pdb5.gz) 24 Kb
  • Biological Unit Coordinates (1m1p.pdb6.gz) 23 Kb
  • Biological Unit Coordinates (1m1p.pdb7.gz) 100 Kb
  • Biological Unit Coordinates (1m1p.pdb8.gz) 100 Kb
  • Biological Unit Coordinates (1m1p.pdb9.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 1M1P
  • CSU: Contacts of Structural Units for 1M1P
  • Likely Quarternary Molecular Structure file(s) for 1M1P
  • Structure Factors (919 Kb)
  • Retrieve 1M1P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M1P from S2C, [Save to disk]
  • Re-refined 1m1p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1M1P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1M1P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M1P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m1pa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1m1pb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1m1pc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1m1pd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1m1pe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1m1pf_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m1p_C] [1m1p_E] [1m1p_B] [1m1p_D] [1m1p] [1m1p_A] [1m1p_F]
  • SWISS-PROT database: [Q8EDL6]
  • Domain organization of [Q8EDL6_SHEON] by SWISSPFAM
    • Other resources with information on 1M1P
  • Community annotation for 1M1P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science