1M61 Transferase date Jul 11, 2002
title Crystal Structure Of The Apo Sh2 Domains Of Zap-70
authors R.H.A.Folmer, S.Geschwindner, Y.Xue
compound source
Molecule: Tyrosine-Protein Kinase Zap-70
Chain: A
Fragment: Tandem Sh2 Domains (Residues 1-256)
Synonym: 70 Kda Zeta-Associated Protein, Syk-Related Tyrosi
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.245 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.851 52.227 54.455 90.00 89.91 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand PO4 enzyme Transferase E.C.2.7.1.112 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure and NMR studies of the apo SH2 domains of ZAP-70: two bikes rather than a tandem., Folmer RH, Geschwindner S, Xue Y, Biochemistry 2002 Dec 3;41(48):14176-84. PMID:12450381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1m61.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1M61
  • CSU: Contacts of Structural Units for 1M61
  • Likely Quarternary Molecular Structure file(s) for 1M61
  • Retrieve 1M61 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M61 from S2C, [Save to disk]
  • View 1M61 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M61
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1M61, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m61a1, region A:1-132 [Jmol] [rasmolscript] [script source]
        - Domain d1m61a2, region A:133-256 [Jmol] [rasmolscript] [script source]
  • Fold representative 1m61 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m61_A] [1m61]
  • SWISS-PROT database: [P43403]
  • Domain organization of [ZAP70_HUMAN] by SWISSPFAM
  • Domain found in 1M61: [SH2 ] by SMART
  • Other resources with information on 1M61
  • Community annotation for 1M61 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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