1M61	Transferase	date	Jul 11, 2002
title	Crystal Structure Of The Apo Sh2 Domains Of Zap-70
authors	R.H.A.Folmer, S.Geschwindner, Y.Xue
compound		source
Molecule: Tyrosine-Protein Kinase Zap-70 Chain: A Fragment: Tandem Sh2 Domains (Residues 1-256) Synonym: 70 Kda Zeta-Associated Protein, Syk-Related Tyrosi Ec: 2.7.1.112 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: P 1 21 1	R_factor 0.245 R_Free 0.286
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.851 52.227 54.455 90.00 89.91 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	PO4	enzyme	Transferase E.C.2.7.1.112 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure and NMR studies of the apo SH2 domains of ZAP-70: two bikes rather than a tandem., Folmer RH, Geschwindner S, Xue Y, Biochemistry 2002 Dec 3;41(48):14176-84. PMID:12450381

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (1m61.pdb1.gz) 42 Kb LPC: Ligand-Protein Contacts for 1M61 CSU: Contacts of Structural Units for 1M61 Likely Quarternary Molecular Structure file(s) for 1M61 Retrieve 1M61 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1M61 from S2C, [Save to disk]

View 1M61 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1M61

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1M61, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1m61a1, region A:1-132 [Jmol] [rasmolscript] [script source]     - Domain d1m61a2, region A:133-256 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1m61_A] [1m61] SWISS-PROT database: [P43403] Domain organization of [ZAP70_HUMAN] by SWISSPFAM Domain found in 1M61: [SH2 ] by SMART

Other resources with information on 1M61

Community annotation for 1M61 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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