1M9I Lipid Binding Protein date Jul 29, 2002
title Crystal Structure Of Phosphorylation-Mimicking Mutant T356d Of Annexin Vi
authors C.Freye-Minks, R.H.Kretsinger, C.E.Creutz
compound source
Molecule: Annexin Vi
Chain: A
Synonym: Lipocortin Vi, P68, P70, Protein III, Chromobindin 20, 67 Kda Calelectrin, Calphobindin-II, Cpb- II;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anx6
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Db334
Expression_system_vector_type: Gal10
Expression_system_plasmid: Yepdb60
symmetry Space Group: P 43
R_factor 0.225 R_Free 0.279
length a length b length c angle alpha angle beta angle gamma
67.970 67.970 204.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand CA enzyme
related structures by homologous chain: 1AVC
  • calcium channel activity
  • mitochondrial calcium ion ho...

  • Primary referenceStructural and dynamic changes in human annexin VI induced by a phosphorylation-mimicking mutation, T356D., Freye-Minks C, Kretsinger RH, Creutz CE, Biochemistry 2003 Jan 28;42(3):620-30. PMID:12534274
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (1m9i.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 1M9I
  • CSU: Contacts of Structural Units for 1M9I
  • Likely Quarternary Molecular Structure file(s) for 1M9I
  • Structure Factors (219 Kb)
  • Retrieve 1M9I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M9I from S2C, [Save to disk]
  • Re-refined 1m9i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1M9I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M9I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1M9I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m9ia1, region A:10-350 [Jmol] [rasmolscript] [script source]
        - Domain d1m9ia2, region A:351-673 [Jmol] [rasmolscript] [script source]
  • Fold representative 1m9i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m9i_A] [1m9i]
  • SWISS-PROT database: [P08133]
  • Belongs to the annexin (annexin) family according to TCDB.
  • Domain organization of [ANXA6_HUMAN] by SWISSPFAM
  • Domain found in 1M9I: [ANX ] by SMART
  • Other resources with information on 1M9I
  • Community annotation for 1M9I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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