1MH5 Immune System date Aug 19, 2002
title The Structure Of The Complex Of The Fab Fragment Of The Este Antibody Ms6-164 And A Transition-State Analog
authors S.N.Ruzheinikov, T.A.Muranova, S.E.Sedelnikova, L.J.Partridge, G.M.Blackburn, I.A.Murray, H.Kakinuma, N.Takashi, K.Shimazaki, J Y.Nishi, D.W.Rice
compound source
Molecule: Immunoglobulin Ms6-164
Chain: A, L
Fragment: Fab Fragment, Light Chain
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell_line: Hybridoma
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Other_details: Fusing Of Mouse Splenocytes With Myeloma Cel

Molecule: Immunoglobulin Ms6-164
Chain: B, H
Fragment: Fab Fragment, Heavy Chain
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell_line: Hybridoma
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Other_details: Fusing Of Mouse Splenocytes With Myeloma Cel
symmetry Space Group: C 1 2 1
R_factor 0.218 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.346 117.104 114.645 90.00 90.14 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand HAL, SO4 enzyme
related structures by homologous chain: 1AJ7, 1DQD, 1I8M
Gene
Ontology
ChainFunctionProcessComponent
A, L


Primary referenceHigh-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity., Ruzheinikov SN, Muranova TA, Sedelnikova SE, Partridge LJ, Blackburn GM, Murray IA, Kakinuma H, Takahashi-Ando N, Shimazaki K, Sun J, Nishi Y, Rice DW, J Mol Biol 2003 Sep 12;332(2):423-35. PMID:12948492
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (1mh5.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (1mh5.pdb2.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 1MH5
  • CSU: Contacts of Structural Units for 1MH5
  • Likely Quarternary Molecular Structure file(s) for 1MH5
  • Structure Factors (389 Kb)
  • Retrieve 1MH5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MH5 from S2C, [Save to disk]
  • Re-refined 1mh5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1MH5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MH5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MH5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mh5a1, region A:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1mh5a2, region A:108-210 [Jmol] [rasmolscript] [script source]
        - Domain d1mh5b2, region B:114-193 [Jmol] [rasmolscript] [script source]
        - Domain d1mh5b1, region B:2-113 [Jmol] [rasmolscript] [script source]
        - Domain d1mh5h2, region H:114-214 [Jmol] [rasmolscript] [script source]
        - Domain d1mh5h1, region H:2-113 [Jmol] [rasmolscript] [script source]
        - Domain d1mh5l1, region L:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1mh5l2, region L:108-212 [Jmol] [rasmolscript] [script source]
  • Fold representative 1mh5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mh5_H] [1mh5_A] [1mh5_L] [1mh5_B] [1mh5]
  • SWISS-PROT database: [P01863]
  • Domain organization of [GCAA_MOUSE] by SWISSPFAM
  • Domains found in 1MH5: [IG_like] [IGv ] by SMART
  • Other resources with information on 1MH5
  • Community annotation for 1MH5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science