1MJN Immune System date Aug 28, 2002
title Crystal Structure Of The Intermediate Affinity Al I Domain M
authors M.Shimaoka, T.Xiao, J.H.Liu, Y.T.Yang, Y.C.Dong, C.D.Jun, A.Mccorm R.G.Zhang, J.H.Wang, T.A.Springer
compound source
Molecule: Integrin Alpha-L
Chain: A
Fragment: Intermediate Affinity Al I Domain
Synonym: Leukocyte Adhesion Glycoprotein Lfa-1 Alpha Chain, Function Associated Molecule 1, Alpha Chain, Cd11a;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.374 57.399 66.909 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand MG enzyme
related structures by homologous chain: 1T0P
Primary referenceStructures of the alpha L I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation., Shimaoka M, Xiao T, Liu JH, Yang Y, Dong Y, Jun CD, McCormack A, Zhang R, Joachimiak A, Takagi J, Wang JH, Springer TA, Cell 2003 Jan 10;112(1):99-111. PMID:12526797
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1mjn.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1MJN
  • CSU: Contacts of Structural Units for 1MJN
  • Likely Quarternary Molecular Structure file(s) for 1MJN
  • Retrieve 1MJN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MJN from S2C, [Save to disk]
  • View 1MJN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MJN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1MJN from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MJN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mjna_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1mjn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mjn_A] [1mjn]
  • SWISS-PROT database: [P20701]
  • Domain organization of [ITAL_HUMAN] by SWISSPFAM
  • Domain found in 1MJN: [VWA ] by SMART
  • Other resources with information on 1MJN
  • Community annotation for 1MJN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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