1MSZ Dna Binding Protein date Sep 20, 2002
title Solution Structure Of The R3h Domain From Human Smubp-2
authors E.Liepinsh, A.Leonchiks, A.Sharipo, L.Guignard, G.Otting
compound source
Molecule: Dna-Binding Protein Smubp-2
Chain: A
Fragment: R3h Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smubp-2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe60
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the R3H domain from human Smubp-2., Liepinsh E, Leonchiks A, Sharipo A, Guignard L, Otting G, J Mol Biol 2003 Feb 7;326(1):217-23. PMID:12547203
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (335 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1MSZ
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1MSZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MSZ from S2C, [Save to disk]
  • View 1MSZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MSZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MSZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1msza_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1msz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1msz] [1msz_A]
  • SWISS-PROT database: [P38935]
  • Domain organization of [SMBP2_HUMAN] by SWISSPFAM
  • Domain found in 1MSZ: [R3H ] by SMART
  • Other resources with information on 1MSZ
  • Community annotation for 1MSZ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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