1N4P	Transferase	date	Nov 01, 2002
title	Protein Geranylgeranyltransferase Type-I Complexed With Gera Diphosphate
authors	J.S.Taylor, T.S.Reid, P.J.Casey, L.S.Beese
compound		source
Molecule: Protein Farnesyltransferasegeranylgeranyltransfe Subunit Alpha; Chain: A, C, E, G, I, K Synonym: Caax Farnesyltransferase Subunit Alpha,Ftase-Alpha Proteins Prenyltransferase Subunit Alpha,Type I Protein Ger Geranyltransferase Subunit Alpha,Ggtase-I-Alpha; Ec: 2.5.1.58,2.5.1.59 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Fnta Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Atcc 63134
Molecule: Geranylgeranyl Transferase Type-1 Subunit Beta Chain: B, D, F, H, J, L Synonym: Geranylgeranyl Transferase Type I Subunit Beta,Ggt Beta,Type I Protein Geranyl-Geranyltransferase Subunit Beta Ec: 2.5.1.59 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Pggt1b Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Atcc 63134
Molecule: Fusion Protein Consisting Of Transforming Protein Ras Related Protein Rap-2b; Chain: M, N Synonym: Kkksktkcvil Peptide Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: The Peptide Was Chemically Synthesized. The Geranylgeranyl Lipid Was Added By The Enzyme.
symmetry	Space Group: C 1 2 1	R_factor 0.204 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 272.338 271.566 185.425 90.00 131.56 90.00
method	X-Ray Diffraction	resolution	2.65 Å
ligand	CL, GER, GRG, ZN	enzyme	Transferase E.C.2.5.1.58 BRENDA
related structures	by homologous chain: 1N4S, 1TNY
Gene Ontology	Chain Function Process Component A, K, E, C, I, G acetylcholine receptor regul... F, J, B, H, D, L
Primary reference	Structure of mammalian protein geranylgeranyltransferase type-I., Taylor JS, Reid TS, Terry KL, Casey PJ, Beese LS, EMBO J 2003 Nov 17;22(22):5963-74. PMID:14609943

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (667 Kb) [Save to disk] Biological Unit Coordinates (1n4p.pdb1.gz) 114 Kb Biological Unit Coordinates (1n4p.pdb2.gz) 115 Kb Biological Unit Coordinates (1n4p.pdb3.gz) 115 Kb Biological Unit Coordinates (1n4p.pdb4.gz) 114 Kb Biological Unit Coordinates (1n4p.pdb5.gz) 117 Kb Biological Unit Coordinates (1n4p.pdb6.gz) 119 Kb LPC: Ligand-Protein Contacts for 1N4P CSU: Contacts of Structural Units for 1N4P Likely Quarternary Molecular Structure file(s) for 1N4P Structure Factors (3162 Kb) Retrieve 1N4P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1N4P from S2C, [Save to disk] Re-refined 1n4p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1N4P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1N4P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1N4P, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1n4pa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1n4pb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1n4pc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1n4pd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1n4pe_, region E [Jmol] [rasmolscript] [script source]     - Domain d1n4pf_, region F [Jmol] [rasmolscript] [script source]     - Domain d1n4pg_, region G [Jmol] [rasmolscript] [script source]     - Domain d1n4ph_, region H [Jmol] [rasmolscript] [script source]     - Domain d1n4pi_, region I [Jmol] [rasmolscript] [script source]     - Domain d1n4pj_, region J [Jmol] [rasmolscript] [script source]     - Domain d1n4pk_, region K [Jmol] [rasmolscript] [script source]     - Domain d1n4pl_, region L [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1n4p_F] [1n4p_D] [1n4p_M] [1n4p_E] [1n4p_B] [1n4p_K] [1n4p_N] [1n4p_L] [1n4p_J] [1n4p_G] [1n4p_I] [1n4p_C] [1n4p_H] [1n4p_A] [1n4p] SWISS-PROT database: [Q04631] [P53610] Domain organization of [FNTA_RAT] [PGTB1_RAT] by SWISSPFAM

Other resources with information on 1N4P

Community annotation for 1N4P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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