1NB8 Hydrolase date Dec 02, 2002
title Structure Of The Catalytic Domain Of Usp7 (Hausp)
authors M.Hu, P.Li, M.Li, W.Li, T.Yao, J.W.Wu, W.Gu, R.E.Cohen, Y.Shi
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 7
Chain: A, B
Fragment: Hausp Core Domain
Synonym: Deubiquitinating Enzyme 7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgex-2t
symmetry Space Group: P 1 21 1
R_factor 0.222 R_Free 0.279
length a length b length c angle alpha angle beta angle gamma
75.647 68.512 76.261 90.00 95.36 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1NBF
A, B

Primary referenceCrystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde., Hu M, Li P, Li M, Li W, Yao T, Wu JW, Gu W, Cohen RE, Shi Y, Cell 2002 Dec 27;111(7):1041-54. PMID:12507430
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (1nb8.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (1nb8.pdb2.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1NB8
  • CSU: Contacts of Structural Units for 1NB8
  • Likely Quarternary Molecular Structure file(s) for 1NB8
  • Retrieve 1NB8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NB8 from S2C, [Save to disk]
  • View 1NB8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NB8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1NB8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nb8a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1nb8b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1nb8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nb8_A] [1nb8_B] [1nb8]
  • SWISS-PROT database: [Q93009]
  • Domain organization of [UBP7_HUMAN] by SWISSPFAM
  • Other resources with information on 1NB8
  • Community annotation for 1NB8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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