1NPD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MSE, NAD	enzyme
related structures	by homologous chain: 1O9B, 1VI2
Gene Ontology	Chain Function Process Component B, A
Primary reference	The 2.3-A crystal structure of the shikimate 5-dehydrogenase orthologue YdiB from Escherichia coli suggests a novel catalytic environment for an NAD-dependent dehydrogenase., Benach J, Lee I, Edstrom W, Kuzin AP, Chiang Y, Acton TB, Montelione GT, Hunt JF, J Biol Chem 2003 May 23;278(21):19176-82. PMID:12624088

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk] Biological Unit Coordinates (1npd.pdb1.gz) 97 Kb LPC: Ligand-Protein Contacts for 1NPD CSU: Contacts of Structural Units for 1NPD Likely Quarternary Molecular Structure file(s) for 1NPD Structure Factors (206 Kb) Retrieve 1NPD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NPD from S2C, [Save to disk] Re-refined 1npd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1NPD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1npd] [1npd_A] [1npd_B] SWISS-PROT database: [P0A6D5]

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