1NZ0 Hydrolase date Feb 14, 2003
title Rnase P Protein From Thermotoga Maritima
authors A.V.Kazantsev, A.A.Krivenko, D.J.Harrington, R.J.Carter, S.R.Hol P.D.Adams, N.R.Pace, Berkeley Structural Genomics Center (Bsg
compound source
Molecule: Ribonuclease P Protein Component
Chain: A, C, B, D
Synonym: Rnasep Protein, Rnase P Protein, Protein C5
Ec: 3.1.26.5
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Gene: Rnpa Or Tm1463
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4ta
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.227 64.143 68.326 90.00 102.02 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand MSE, SO4 enzyme Hydrolase E.C.3.1.26.5 BRENDA
note 1NZ0 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceHigh-resolution structure of RNase P protein from Thermotoga maritima., Kazantsev AV, Krivenko AA, Harrington DJ, Carter RJ, Holbrook SR, Adams PD, Pace NR, Proc Natl Acad Sci U S A 2003 Jun 24;100(13):7497-502. Epub 2003 Jun 10. PMID:12799461
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk]
  • Biological Unit Coordinates (1nz0.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (1nz0.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (1nz0.pdb3.gz) 47 Kb
  • Biological Unit Coordinates (1nz0.pdb4.gz) 49 Kb
  • Biological Unit Coordinates (1nz0.pdb5.gz) 185 Kb
  • Biological Unit Coordinates (1nz0.pdb6.gz) 185 Kb
  • Biological Unit Coordinates (1nz0.pdb7.gz) 93 Kb
  • Biological Unit Coordinates (1nz0.pdb8.gz) 93 Kb
  • Biological Unit Coordinates (1nz0.pdb9.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 1NZ0
  • CSU: Contacts of Structural Units for 1NZ0
  • Likely Quarternary Molecular Structure file(s) for 1NZ0
  • Structure Factors (1972 Kb)
  • Retrieve 1NZ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NZ0 from S2C, [Save to disk]
  • Re-refined 1nz0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1NZ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NZ0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1NZ0 1NZ0A 1NZ0B 1NZ0C 1NZ0D from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NZ0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nz0a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1nz0b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1nz0c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1nz0d_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nz0] [1nz0_A] [1nz0_D] [1nz0_C] [1nz0_B]
  • SWISS-PROT database: [Q9X1H4]
  • Domain organization of [RNPA_THEMA] by SWISSPFAM
  • Other resources with information on 1NZ0
  • Community annotation for 1NZ0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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