1OGU Transferase date May 13, 2003
title Structure Of Human Thr160-Phospho Cdk2cyclin A Complexed With A 2-Arylamino-4-Cyclohexylmethyl-5-Nitroso-6-Aminopyrimidine Inhibitor
authors D.J.Pratt, J.A.Endicott, M.E.M.Noble
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A, C
Synonym: P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Other_details: Phosphorylated On Thr160
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cyclin A2
Chain: B, D
Fragment: Residues 174-432
Synonym: Cyclin A, Cyclin A3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.836 133.676 148.335 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.6 Å
ligand SGM, ST8, TPO BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1GY3, 1H4L, 1JST, 2BHH
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructure-based design of 2-arylamino-4-cyclohexylmethyl-5-nitroso-6-aminopyrimidine inhibitors of cyclin-dependent kinases 1 and 2., Sayle KL, Bentley J, Boyle FT, Calvert AH, Cheng Y, Curtin NJ, Endicott JA, Golding BT, Hardcastle IR, Jewsbury P, Mesguiche V, Newell DR, Noble ME, Parsons RJ, Pratt DJ, Wang LZ, Griffin RJ, Bioorg Med Chem Lett 2003 Sep 15;13(18):3079-82. PMID:12941338
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (1ogu.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (1ogu.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 1OGU
  • CSU: Contacts of Structural Units for 1OGU
  • Likely Quarternary Molecular Structure file(s) for 1OGU
  • Structure Factors (329 Kb)
  • Retrieve 1OGU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OGU from S2C, [Save to disk]
  • Re-refined 1ogu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OGU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OGU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OGU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ogua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ogub1, region B:178-309 [Jmol] [rasmolscript] [script source]
        - Domain d1ogub2, region B:310-432 [Jmol] [rasmolscript] [script source]
        - Domain d1oguc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ogud1, region D:178-309 [Jmol] [rasmolscript] [script source]
        - Domain d1ogud2, region D:310-432 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ogu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ogu_B] [1ogu_A] [1ogu] [1ogu_D] [1ogu_C]
  • SWISS-PROT database: [P20248] [P24941]
  • Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM
  • Domains found in 1OGU: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 1OGU
  • Community annotation for 1OGU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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