1P9F Neuropeptide date May 12, 2003
title Nmr Structure Of Neurokinin B From Dyana
authors A.K.Mantha, I.R.Chandrashekar, N.Z.Baquer, S.M.Cowsik
compound source
Molecule: Neurokinin B
Chain: A
Synonym: Nkb, Neuromedin K, Zneurok1
Engineered: Yes
Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Homo Sapiens (Humans).
methodSolution NMR
Primary referenceThree dimensional structure of Mammalian tachykinin Peptide neurokinin B bound to lipid micelles., Mantha AK, Chandrashekar IR, Baquer NZ, Cowsik SM, J Biomol Struct Dyn 2004 Oct;22(2):137-48. PMID:15317475
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1P9F
  • Original NMR restraints for 1P9F from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1P9F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P9F from S2C, [Save to disk]
  • View 1P9F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P9F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P9F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p9fa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1p9f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p9f] [1p9f_A]
  • SWISS-PROT database: [Q9UHF0]
  • Domain organization of [TKNK_HUMAN] by SWISSPFAM
  • Other resources with information on 1P9F
  • Community annotation for 1P9F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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