1PJF Viral Protein date Jun 02, 2003
title Solid State Nmr Structure Of The Pf1 Major Coat Protein In Magnetically Aligned Bacteriophage
authors D.S.Thiriot, A.A.Nevzorov, L.Zagyanskiy, C.H.Wu, S.J.Opella
compound source
Molecule: Coat Protein B
Chain: A
Synonym: Major Coat Protein
Organism_scientific: Pseudomonas Phage Pf1
Organism_taxid: 10871
Other_details: Pseudomonas Aeruginosa (Atcc #25102) Was The Bacteria.
methodSolid-State NMR
related structures by homologous chain: 1PFI, 1ZN5
Primary referenceStructure of the coat protein in Pf1 bacteriophage determined by solid-state NMR spectroscopy., Thiriot DS, Nevzorov AA, Zagyanskiy L, Wu CH, Opella SJ, J Mol Biol. 2004 Aug 13;341(3):869-79. PMID:15288792
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk]
  • Biological Unit Coordinates (1pjf.pdb1.gz) 3 Kb
  • CSU: Contacts of Structural Units for 1PJF
  • Original NMR restraints for 1PJF from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1PJF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PJF from S2C, [Save to disk]
  • View 1PJF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PJF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PJF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pjfa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1pjf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pjf_A] [1pjf]
  • SWISS-PROT database: [P03621]
  • Domain organization of [CAPSD_BPPF1] by SWISSPFAM
  • Other resources with information on 1PJF
  • Community annotation for 1PJF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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