1PL8 Oxidoreductase date Jun 07, 2003
title Human Sdhnad+ Complex
authors T.A.Pauly, J.L.Ekstrom, D.A.Beebe, B.Chrunyk, D.Cunningham, M.Gri A.Kamath, S.E.Lee, R.Madura, D.Mcguire, T.Subashi, D.Wasilko, P.W B.L.Mylari, P.J.Oates, P.D.Adams, V.L.Rath
compound source
Molecule: Human Sorbitol Dehydrogenase
Chain: A, B, C, D
Synonym: L-Iditol 2-Dehydrogenase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet23a
symmetry Space Group: P 62
R_factor 0.195 R_Free 0.222
length a length b length c angle alpha angle beta angle gamma
133.776 133.776 224.708 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand NAD, ZN enzyme Oxidoreductase E.C. BRENDA
related structures by homologous chain: 1PL6
A, D, C, B

Primary referenceX-ray crystallographic and kinetic studies of human sorbitol dehydrogenase., Pauly TA, Ekstrom JL, Beebe DA, Chrunyk B, Cunningham D, Griffor M, Kamath A, Lee SE, Madura R, Mcguire D, Subashi T, Wasilko D, Watts P, Mylari BL, Oates PJ, Adams PD, Rath VL, Structure (Camb) 2003 Sep;11(9):1071-85. PMID:12962626
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (1pl8.pdb1.gz) 250 Kb
  • Biological Unit Coordinates (1pl8.pdb2.gz) 127 Kb
  • Biological Unit Coordinates (1pl8.pdb3.gz) 249 Kb
  • LPC: Ligand-Protein Contacts for 1PL8
  • CSU: Contacts of Structural Units for 1PL8
  • Likely Quarternary Molecular Structure file(s) for 1PL8
  • Retrieve 1PL8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PL8 from S2C, [Save to disk]
  • View 1PL8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PL8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PL8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pl8a1, region A:1-145,A:317-356 [Jmol] [rasmolscript] [script source]
        - Domain d1pl8a2, region A:146-316 [Jmol] [rasmolscript] [script source]
        - Domain d1pl8b1, region B:1-145,B:317-356 [Jmol] [rasmolscript] [script source]
        - Domain d1pl8b2, region B:146-316 [Jmol] [rasmolscript] [script source]
        - Domain d1pl8c1, region C:1-145,C:317-356 [Jmol] [rasmolscript] [script source]
        - Domain d1pl8c2, region C:146-316 [Jmol] [rasmolscript] [script source]
        - Domain d1pl8d1, region D:1-145,D:317-356 [Jmol] [rasmolscript] [script source]
        - Domain d1pl8d2, region D:146-316 [Jmol] [rasmolscript] [script source]
  • Fold representative 1pl8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pl8_A] [1pl8_C] [1pl8_B] [1pl8] [1pl8_D]
  • SWISS-PROT database: [Q00796]
  • Domain organization of [DHSO_HUMAN] by SWISSPFAM
  • Other resources with information on 1PL8
  • Community annotation for 1PL8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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