4Z9L Transferase Inhibitor date Apr 10, 2015
title The Structure Of Jnk3 In Complex With An Imidazole-Pyrimidin Inhibitor
authors G.Scapin, S.B.Patel, J.Lisnock, J.W.Becker, P.V.Lograsso, O.S.Sma G.Bricogne
compound source
Molecule: Mitogen-Activated Protein Kinase 10
Chain: A
Fragment: Unp Residues 40-401
Synonym: Mapk 10,Map Kinase P49 3f12,Stress-Activated Prote 1b,Sapk1b,Stress-Activated Protein Kinase Jnk3,C-Jun N-Term Kinase 3;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk10, Jnk3, Jnk3a, Prkm10, Sapk1b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.951 71.525 106.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 880, ANP, UNX enzyme Transferase E.C.2.7.11.24 BRENDA
note 4Z9L supersedes 1PMQ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of JNK3 in complex with small molecule inhibitors: structural basis for potency and selectivity., Scapin G, Patel SB, Lisnock J, Becker JW, LoGrasso PV, Chem Biol. 2003 Aug;10(8):705-12. PMID:12954329
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (4z9l.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 4Z9L
  • CSU: Contacts of Structural Units for 4Z9L
  • Structure Factors (738 Kb)
  • Retrieve 4Z9L in mmCIF format [Save to disk]
  • Re-refined 4z9l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z9L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4Z9L, from MSDmotif at EBI
  • Fold representative 4z9l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z9l_A] [4z9l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Z9L: [S_TKc ] by SMART
  • Other resources with information on 4Z9L
  • Community annotation for 4Z9L at PDBWiki (http://pdbwiki.org)

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