1PU4 Oxidoreductase date Jun 24, 2003
title Crystal Structure Of Human Vascular Adhesion Protein-1
authors T.A.Salminen, T.T.Airenne
compound source
Molecule: Membrane Copper Amine Oxidase
Chain: A, B
Synonym: Vascular Adhesion Protein- 1, Vap-1, Hpao
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aoc3 Or Vap1
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell: Ovary Cells
symmetry Space Group: P 65 2 2
R_factor 0.217 R_Free 0.254
length a length b length c angle alpha angle beta angle gamma
225.916 225.916 218.668 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand CA, CU, NAG, TPQ enzyme Oxidoreductase E.C. BRENDA
A, B

Primary referenceCrystal structure of the human vascular adhesion protein-1: unique structural features with functional implications., Airenne TT, Nymalm Y, Kidron H, Smith DJ, Pihlavisto M, Salmi M, Jalkanen S, Johnson MS, Salminen TA, Protein Sci. 2005 Aug;14(8):1964-74. PMID:16046623
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (1pu4.pdb1.gz) 220 Kb
  • LPC: Ligand-Protein Contacts for 1PU4
  • CSU: Contacts of Structural Units for 1PU4
  • Likely Quarternary Molecular Structure file(s) for 1PU4
  • Structure Factors (529 Kb)
  • Retrieve 1PU4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PU4 from S2C, [Save to disk]
  • Re-refined 1pu4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PU4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PU4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PU4, from MSDmotif at EBI
  • Fold representative 1pu4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pu4_B] [1pu4_A] [1pu4]
  • SWISS-PROT database: [Q16853]
  • Domain organization of [AOC3_HUMAN] by SWISSPFAM
  • Other resources with information on 1PU4
  • Community annotation for 1PU4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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