1PVE Dna Binding Protein date Jun 27, 2003
title Solution Structure Of Xpc Binding Domain Of Hhr23b
authors B.Kim, K.S.Ryu, H.J.Kim, B.S.Choi
compound source
Molecule: Uv Excision Repair Protein Rad23 Homolog B
Chain: A
Fragment: Xpc Binding Domain
Synonym: Hhr23b
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hh23b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
related structures by homologous chain: 1TP4

Primary referenceSolution structure and backbone dynamics of the XPC-binding domain of the human DNA repair protein hHR23B., Kim B, Ryu KS, Kim HJ, Cho SJ, Choi BS, FEBS J 2005 May;272(10):2467-76. PMID:15885096
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (378 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1PVE
  • Original NMR restraints for 1PVE from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1PVE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PVE from S2C, [Save to disk]
  • View 1PVE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PVE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PVE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pvea_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1pve from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pve] [1pve_A]
  • SWISS-PROT database: [P54727]
  • Domain organization of [RD23B_HUMAN] by SWISSPFAM
  • Domain found in 1PVE: [STI1 ] by SMART
  • Other resources with information on 1PVE
  • Community annotation for 1PVE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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