OCA Atlas for 1Q0D

1Q0D

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

3NI, SO4

enzyme

note

1Q0D (Molecule of the Month:pdb94)

related structures

by homologous chain: 1Q0F, 1T6I

Gene
Ontology

Chain	Function	Process	Component
L, G, D, I, F, E, J, C, A, B, H, K

Primary reference

Crystal structure of nickel-containing superoxide dismutase reveals another type of active site., Wuerges J, Lee JW, Yim YI, Yim HS, Kang SO, Carugo KD, Proc Natl Acad Sci U S A 2004 Jun 8;101(23):8569-74. Epub 2004 Jun 1. PMID:15173586

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]

Biological Unit Coordinates (1q0d.pdb1.gz) 126 Kb

Biological Unit Coordinates (1q0d.pdb2.gz) 127 Kb

LPC: Ligand-Protein Contacts for 1Q0D

CSU: Contacts of Structural Units for 1Q0D

Likely Quarternary Molecular Structure file(s) for 1Q0D

Structure Factors (699 Kb)

Retrieve 1Q0D in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1Q0D from S2C, [Save to disk]

Re-refined 1q0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Q0D in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1q0d] [1q0d_A] [1q0d_B] [1q0d_C] [1q0d_D] [1q0d_E] [1q0d_F] [1q0d_G] [1q0d_H] [1q0d_I] [1q0d_J] [1q0d_K] [1q0d_L]

SWISS-PROT database: [P80734]

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