OCA Atlas for 1R5I

1R5I

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MSE, PO4

enzyme

related structures

by homologous chain: 1BX2, 1FYT, 1KG0

Gene
Ontology

Chain	Function	Process	Component
B, F
E, A

Primary reference

Crystal structure of Mycoplasma arthritidis mitogen complexed with HLA-DR1 reveals a novel superantigen fold and a dimerized superantigen-MHC complex., Zhao Y, Li Z, Drozd SJ, Guo Y, Mourad W, Li H, Structure (Camb) 2004 Feb;12(2):277-88. PMID:14962388

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]

Biological Unit Coordinates (1r5i.pdb1.gz) 102 Kb

Biological Unit Coordinates (1r5i.pdb2.gz) 101 Kb

LPC: Ligand-Protein Contacts for 1R5I

CSU: Contacts of Structural Units for 1R5I

Likely Quarternary Molecular Structure file(s) for 1R5I

Structure Factors (635 Kb)

Retrieve 1R5I in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1R5I from S2C, [Save to disk]

Re-refined 1r5i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1R5I in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1r5i] [1r5i_A] [1r5i_B] [1r5i_C] [1r5i_D] [1r5i_E] [1r5i_F] [1r5i_G] [1r5i_H]

SWISS-PROT database: [P04229] [P01903] [P11133] [Q48898]

Domains found in 1R5I: [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART

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