OCA Atlas for 1RF1

1RF1

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, FUC, NAG

enzyme

related structures

by homologous chain: 1FZG, 1RE4

Gene
Ontology

Chain	Function	Process	Component
A, D
C, F
E, B

Primary reference

Calcium-binding site beta2, adjacent to the "b" polymerization site, modulates lateral aggregation of protofibrils during fibrin polymerization., Kostelansky MS, Lounes KC, Ping LF, Dickerson SK, Gorkun OV, Lord ST, Biochemistry 2004 Mar 9;43(9):2475-83. PMID:14992585

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (225 Kb) [Save to disk]

Biological Unit Coordinates (1rf1.pdb1.gz) 111 Kb

Biological Unit Coordinates (1rf1.pdb2.gz) 111 Kb

LPC: Ligand-Protein Contacts for 1RF1

CSU: Contacts of Structural Units for 1RF1

Likely Quarternary Molecular Structure file(s) for 1RF1

Structure Factors (735 Kb)

Retrieve 1RF1 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1RF1 from S2C, [Save to disk]

Re-refined 1rf1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RF1 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rf1] [1rf1_A] [1rf1_B] [1rf1_C] [1rf1_D] [1rf1_E] [1rf1_F] [1rf1_G] [1rf1_H] [1rf1_I] [1rf1_J]

SWISS-PROT database: [P02671] [P02675] [P02679]

Domain found in 1RF1: [FBG ] by SMART

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