1RHF Transferase date Nov 14, 2003
title Crystal Structure Of Human Tyro3-D1d2
authors C.Heiring, B.Dahlback, Y.A.Muller
compound source
Molecule: Tyrosine-Protein Kinase Receptor Tyro3
Chain: A, B
Fragment: N-Terminal Ig-Domain
Synonym: Tyrosine-Protein Kinase Rse, Tyrosine-Protein Kina Tyrosine-Protein Kinase Dtk, Protein-Tyrosine Kinase Byk;
Ec: 2.7.1.112
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tyro3, Rse, Sky, Dtk, Byk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a+
symmetry Space Group: P 61
R_factor 0.209 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.550 109.550 62.470 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.96 Å
ligand ACT, EPE, MSE, ZN enzyme Transferase E.C.2.7.1.112 BRENDA
note 1RHF is a representative structure
Primary referenceLigand recognition and homophilic interactions in Tyro3: structural insights into the Axl/Tyro3 receptor tyrosine kinase family., Heiring C, Dahlback B, Muller YA, J Biol Chem 2004 Feb 20;279(8):6952-8. Epub 2003 Nov 17. PMID:14623883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (1rhf.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (1rhf.pdb2.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 1RHF
  • CSU: Contacts of Structural Units for 1RHF
  • Likely Quarternary Molecular Structure file(s) for 1RHF
  • Structure Factors (215 Kb)
  • Retrieve 1RHF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RHF from S2C, [Save to disk]
  • Re-refined 1rhf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RHF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RHF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RHF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rhfa1, region A:7-97 [Jmol] [rasmolscript] [script source]
        - Domain d1rhfa2, region A:98-182 [Jmol] [rasmolscript] [script source]
        - Domain d1rhfb1, region B:7-97 [Jmol] [rasmolscript] [script source]
        - Domain d1rhfb2, region B:98-182 [Jmol] [rasmolscript] [script source]
  • Fold representative 1rhf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rhf_A] [1rhf_B] [1rhf]
  • SWISS-PROT database: [Q06418]
  • Domain organization of [TYRO3_HUMAN] by SWISSPFAM
  • Domains found in 1RHF: [IG_like] [IGc2 ] by SMART
  • Other resources with information on 1RHF
  • Community annotation for 1RHF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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