1RMP Luminescent Protein date Nov 28, 2003
title Probing The Role Of Tryptophans In Aequorea Victoria Green Fluorescent Proteins With An Expanded Genetic Code
authors N.Budisa, P.P.Pal, S.Alefelder, P.Birle, T.Krywcun, M.Rubini, W.Wenger, J.H.Bae, T.Steiner
compound source
Molecule: Sigf1-Gfp Fusion Protein
Chain: A
Engineered: Yes
Organism_scientific: Aequorea Victoria
Organism_taxid: 6100
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pecfp
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.769 62.770 70.429 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand 23S, CRO enzyme
related structures by homologous chain: 1RM9
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProbing the role of tryptophans in Aequorea victoria green fluorescent proteins with an expanded genetic code., Budisa N, Pal PP, Alefelder S, Birle P, Krywcun T, Rubini M, Wenger W, Bae JH, Steiner T, Biol Chem 2004 Feb;385(2):191-202. PMID:15101562
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1rmp.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1RMP
  • CSU: Contacts of Structural Units for 1RMP
  • Likely Quarternary Molecular Structure file(s) for 1RMP
  • Retrieve 1RMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RMP from S2C, [Save to disk]
  • View 1RMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RMP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RMP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rmpa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1rmp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rmp_A] [1rmp]
  • SWISS-PROT database: [P42212]
  • Domain organization of [GFP_AEQVI] by SWISSPFAM
  • Other resources with information on 1RMP
  • Community annotation for 1RMP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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