1RY8	Oxidoreductase	date	Dec 19, 2003
title	Prostaglandin F Synthase Complexed With Nadph And Rutin
authors	J.Komoto, T.Yamada, K.Watanabe, F.Takusagawa
compound		source
Molecule: Aldo-Keto Reductase Family 1 Member C3 Chain: A, B Synonym: Akr1c3, Trans-1,2-Dihydrobenzene-1,2-Diol Dehydrog Chlordecone Reductase Homolog Hakrb, Ha1753, Dihydrodiol Dehydrogenase, Type I, Dihydrodiol Dehydrogenase 3, Dd3, 3- Hydroxysteroid Dehydrogenase, 3alpha-Hsd, Prostaglandin F S Ec: 1.1.1.-, 1.3.1.20, 1.1.1.188 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Akr1c3, Ddh1, Pgfs, Kiaa0119 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor 0.205 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.060 49.370 83.590 73.90 86.30 69.90
method	X-Ray Diffraction	resolution	1.69 Å
ligand	NDP, RUT	enzyme	Oxidoreductase E.C.1.1.1 BRENDA
related structures	by homologous chain: 1MRQ, 1RY0
Gene Ontology	Chain Function Process Component A, B NADP-retinol dehydrogenase a...
Primary reference	Crystal structure of human prostaglandin F synthase (AKR1C3)., Komoto J, Yamada T, Watanabe K, Takusagawa F, Biochemistry 2004 Mar 2;43(8):2188-98. PMID:14979715

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk] Biological Unit Coordinates (1ry8.pdb1.gz) 59 Kb Biological Unit Coordinates (1ry8.pdb2.gz) 59 Kb LPC: Ligand-Protein Contacts for 1RY8 CSU: Contacts of Structural Units for 1RY8 Likely Quarternary Molecular Structure file(s) for 1RY8 Structure Factors (681 Kb) Retrieve 1RY8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RY8 from S2C, [Save to disk] Re-refined 1ry8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RY8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RY8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RY8, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ry8a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ry8b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ry8] [1ry8_A] [1ry8_B] SWISS-PROT database: [P42330] Domain organization of [AK1C3_HUMAN] by SWISSPFAM

Other resources with information on 1RY8

Community annotation for 1RY8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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