1S0X Hormone Growth Factor Receptor date Jan 05, 2004
title Crystal Structure Of The Human Roralpha Ligand Binding Domain In Complex With Cholesterol Sulfate At 2.2a
authors J.Kallen, J.M.Schlaeppi, F.Bitsch, I.Delhon, B.Fournier
compound source
Molecule: Nuclear Receptor Ror-Alpha
Chain: A
Fragment: Ligand Binding Domain
Synonym: Nuclear Receptor Rzr-Alpha
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rora, Nr1f1, Rzra
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Bacculovirus
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.400 49.900 60.700 90.00 97.80 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand C3S enzyme
related structures by homologous chain: 1N4H
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the human RORalpha Ligand binding domain in complex with cholesterol sulfate at 2.2 A., Kallen J, Schlaeppi JM, Bitsch F, Delhon I, Fournier B, J Biol Chem 2004 Apr 2;279(14):14033-8. Epub 2004 Jan 13. PMID:14722075
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1s0x.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1S0X
  • CSU: Contacts of Structural Units for 1S0X
  • Likely Quarternary Molecular Structure file(s) for 1S0X
  • Structure Factors (214 Kb)
  • Retrieve 1S0X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S0X from S2C, [Save to disk]
  • Re-refined 1s0x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1S0X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S0X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1S0X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s0xa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1s0x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s0x_A] [1s0x]
  • SWISS-PROT database: [P35398]
  • Domain organization of [RORA_HUMAN] by SWISSPFAM
  • Domain found in 1S0X: [HOLI ] by SMART
  • Other resources with information on 1S0X
  • Community annotation for 1S0X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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