1S2C Oxidoreductase date Jan 08, 2004
title Crystal Structures Of Prostaglandin D2 11-Ketoreductase In Complex With The Non-Steroidal Anti-Inflammatory Drugs Flufenamic Acid And Indomethacin
authors A.L.Lovering, J.P.Ride, C.M.Bunce, J.C.Desmond, S.M.Cummings, S.A.White
compound source
Molecule: Aldo-Keto Reductase Family 1 Member C3
Chain: A
Synonym: Akr1c3, Prostaglandin D2 11-Ketoreductase, Prostaglandin F Synthase, 3-Alpha-Hsd-Type-2, 17-Beta-Hsd- Type-5;
Ec: 1.1.1.213, 1.3.1.20, 1.1.1.62
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: P 21 21 21
R_factor 0.168 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.798 63.000 96.289 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand DMS, FLF, NAP BindingDB enzyme Oxidoreductase E.C.1.1.1.213 BRENDA
related structures by homologous chain: 1S2A, 1XJB
Gene
Ontology
ChainFunctionProcessComponent
A
  • NADP-retinol dehydrogenase a...


  • Primary referenceCrystal structures of prostaglandin D(2) 11-ketoreductase (AKR1C3) in complex with the nonsteroidal anti-inflammatory drugs flufenamic acid and indomethacin., Lovering AL, Ride JP, Bunce CM, Desmond JC, Cummings SM, White SA, Cancer Res 2004 Mar 1;64(5):1802-10. PMID:14996743
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (1s2c.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 1S2C
  • CSU: Contacts of Structural Units for 1S2C
  • Likely Quarternary Molecular Structure file(s) for 1S2C
  • Retrieve 1S2C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S2C from S2C, [Save to disk]
  • View 1S2C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S2C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1S2C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s2ca_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1s2c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s2c] [1s2c_A]
  • SWISS-PROT database: [P42330]
  • Domain organization of [AK1C3_HUMAN] by SWISSPFAM
  • Other resources with information on 1S2C
  • Community annotation for 1S2C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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