1S9C Lyase date Feb 04, 2004
title Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2 Domain Of Human Peroxisomal Multifunctional Enzyme Type 2
authors M.K.Koski, A.M.Haapalainen, J.K.Hiltunen, T.Glumoff
compound source
Molecule: Peroxisomal Multifunctional Enzyme Type 2
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: 2-Enoyl-Coenzyme A Hydratase 2 Domain
Synonym: Mfe-2,D-Bifunctional Protein, Dbp, 17-Beta- Hydroxysteroid Dehydrogenase 4, 17-Beta-Hsd 4;
Ec: 4.2.1.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsd17b4, Edh17b4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3d
symmetry Space Group: P 1 21 1
R_factor 0.229 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.295 105.431 206.944 90.00 103.37 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Lyase E.C.4.2.1 BRENDA
Primary referenceCrystal structure of 2-enoyl-CoA hydratase 2 from human peroxisomal multifunctional enzyme type 2., Koski KM, Haapalainen AM, Hiltunen JK, Glumoff T, J Mol Biol 2005 Feb 4;345(5):1157-69. Epub 2004 Dec 10. PMID:15644212
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (502 Kb) [Save to disk]
  • Biological Unit Coordinates (1s9c.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (1s9c.pdb2.gz) 89 Kb
  • Biological Unit Coordinates (1s9c.pdb3.gz) 87 Kb
  • Biological Unit Coordinates (1s9c.pdb4.gz) 89 Kb
  • Biological Unit Coordinates (1s9c.pdb5.gz) 89 Kb
  • Biological Unit Coordinates (1s9c.pdb6.gz) 86 Kb
  • CSU: Contacts of Structural Units for 1S9C
  • Likely Quarternary Molecular Structure file(s) for 1S9C
  • Structure Factors (780 Kb)
  • Retrieve 1S9C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S9C from S2C, [Save to disk]
  • Re-refined 1s9c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1S9C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S9C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1S9C, from MSDmotif at EBI
  • Fold representative 1s9c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s9c_G] [1s9c_B] [1s9c_J] [1s9c_L] [1s9c_K] [1s9c_I] [1s9c_A] [1s9c_H] [1s9c_C] [1s9c_E] [1s9c_F] [1s9c] [1s9c_D]
  • SWISS-PROT database: [P51659]
  • Domain organization of [DHB4_HUMAN] by SWISSPFAM
  • Other resources with information on 1S9C
  • Community annotation for 1S9C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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