OCA Atlas for 1SMY

1SMY

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

G4P, MG, ZN

enzyme

related structures

by homologous chain: 1IW7, 1KU2

Gene
Ontology

Chain	Function	Process	Component
D, N
F, P	bacterial sigma factor activ...
L, B, A, K
M, C
O, E

Primary reference

Structural basis for transcription regulation by alarmone ppGpp., Artsimovitch I, Patlan V, Sekine S, Vassylyeva MN, Hosaka T, Ochi K, Yokoyama S, Vassylyev DG, Cell 2004 Apr 30;117(3):299-310. PMID:15109491

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1281 Kb) [Save to disk]

Biological Unit Coordinates (1smy.pdb1.gz) 640 Kb

Biological Unit Coordinates (1smy.pdb2.gz) 642 Kb

LPC: Ligand-Protein Contacts for 1SMY

CSU: Contacts of Structural Units for 1SMY

Likely Quarternary Molecular Structure file(s) for 1SMY

Structure Factors (3199 Kb)

Retrieve 1SMY in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1SMY from S2C, [Save to disk]

Re-refined 1smy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1SMY in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1smy] [1smy_A] [1smy_B] [1smy_C] [1smy_D] [1smy_E] [1smy_F] [1smy_K] [1smy_L] [1smy_M] [1smy_N] [1smy_O] [1smy_P]

SWISS-PROT database: [Q9WX78] [Q9Z9H6] [Q8RQE9] [Q8RQE8] [Q8RQE7]

Domains found in 1SMY: [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART

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