1SR7 Transcription date Mar 22, 2004
title Progesterone Receptor Hormone Binding Domain With Bound Mome Furoate
authors K.P.Madauss, S.J.Deng, R.J.Austin, M.H.Lambert, I.Mclay, J.Pritc S.A.Short, E.L.Stewart, I.J.Uings, S.P.Williams
compound source
Molecule: Progesterone Receptor
Chain: A, B
Fragment: Ligand Binding Domain
Synonym: Pr
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pgr, Nr3c3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21[De3]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phisgst-Pr
symmetry Space Group: P 1 21 1
R_factor 0.174 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.112 64.256 70.091 90.00 96.88 90.00
method X-Ray Diffractionresolution 1.46 Å
ligand GOL, MOF, SO4 BindingDB enzyme
related structures by homologous chain: 1A28, 1SQN
Primary referenceProgesterone receptor ligand binding pocket flexibility: crystal structures of the norethindrone and mometasone furoate complexes., Madauss KP, Deng SJ, Austin RJ, Lambert MH, McLay I, Pritchard J, Short SA, Stewart EL, Uings IJ, Williams SP, J Med Chem 2004 Jun 17;47(13):3381-7. PMID:15189034
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (1sr7.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 1SR7
  • CSU: Contacts of Structural Units for 1SR7
  • Likely Quarternary Molecular Structure file(s) for 1SR7
  • Structure Factors (643 Kb)
  • Retrieve 1SR7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SR7 from S2C, [Save to disk]
  • Re-refined 1sr7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SR7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SR7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1SR7 1SR7A 1SR7B from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SR7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sr7a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1sr7b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1sr7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sr7_A] [1sr7] [1sr7_B]
  • SWISS-PROT database: [P06401]
  • Domain organization of [PRGR_HUMAN] by SWISSPFAM
  • Domain found in 1SR7: [HOLI ] by SMART
  • Other resources with information on 1SR7
  • Community annotation for 1SR7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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