1T2M Protein Binding date Apr 22, 2004
title Solution Structure Of The Pdz Domain Of Af-6
authors H.Zhou, J.H.Wu, Y.Q.Xu, A.D.Huang, Y.Y.Shi
compound source
Molecule: Af-6 Protein
Chain: A
Fragment: Pdz Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Brain
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-22b(+)
methodSolution NMR
Primary referenceSolution structure of AF-6 PDZ domain and its interaction with the C-terminal peptides from Neurexin and Bcr., Zhou H, Xu Y, Yang Y, Huang A, Wu J, Shi Y, J Biol Chem 2005 Apr 8;280(14):13841-7. Epub 2005 Jan 31. PMID:15684424
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (460 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1T2M
  • Original NMR restraints for 1T2M from PDB
  • Retrieve 1T2M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T2M from S2C, [Save to disk]
  • View 1T2M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T2M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1T2M, from MSDmotif at EBI
  • Fold representative 1t2m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t2m_A] [1t2m]
  • SWISS-PROT database: [P55196]
  • Domain organization of [AFAD_HUMAN] by SWISSPFAM
  • Domain found in 1T2M: [PDZ ] by SMART
  • Other resources with information on 1T2M
  • Community annotation for 1T2M at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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