1TTE Ligase date Jun 22, 2004
title The Structure Of A Class II Ubiquitin-Conjugating Enzyme, Ubc1.
authors N.Merkley, G.S.Shaw
compound source
Molecule: Ubiquitin-Conjugating Enzyme E2-24 Kda
Chain: A
Fragment: Ubc1
Synonym: Ubiquitin-Protein Ligase, Ubiquitin Carrier Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Ubc1, Ydr177w, Yd9395.10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
methodSolution NMR
enzyme Ligase E.C. BRENDA
related structures by homologous chain: 1FXT

Primary referenceSolution structure of the flexible class II ubiquitin-conjugating enzyme Ubc1 provides insights for polyubiquitin chain assembly., Merkley N, Shaw GS, J Biol Chem 2004 Aug 24;. PMID:15328341
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1202 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1TTE
  • Original NMR restraints for 1TTE from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1TTE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TTE from S2C, [Save to disk]
  • View 1TTE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TTE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TTE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ttea1, region A:161-215 [Jmol] [rasmolscript] [script source]
        - Domain d1ttea2, region A:2-160 [Jmol] [rasmolscript] [script source]
  • Fold representative 1tte from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tte_A] [1tte]
  • SWISS-PROT database: [P21734]
  • Domain organization of [UBC1_YEAST] by SWISSPFAM
  • Domain found in 1TTE: [UBCc ] by SMART
  • Other resources with information on 1TTE
  • Community annotation for 1TTE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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