2VDM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand AGG, CA, GOL, MAN, MG, NAG BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis for distinctive recognition of fibrinogen gammaC peptide by the platelet integrin alphaIIbbeta3., Springer TA, Zhu J, Xiao T, J Cell Biol. 2008 Aug 25;182(4):791-800. Epub 2008 Aug 18. PMID:18710925
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • Biological Unit Coordinates (2vdm.pdb1.gz) 217 Kb
  • LPC: Ligand-Protein Contacts for 2VDM
  • CSU: Contacts of Structural Units for 2VDM
  • Likely Quarternary Molecular Structure file(s) for 2VDM
  • Structure Factors (656 Kb)
  • Retrieve 2VDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2VDM from S2C, [Save to disk]
  • Re-refined 2vdm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2VDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2vdm] [2vdm_A] [2vdm_B] [2vdm_H] [2vdm_L]
  • SWISS-PROT database: [P01837] [P08514] [P05106]
  • Domains found in 2VDM: [IG_like] [IGv] [INB] [Int_alpha] [PSI] [VWA ] by SMART

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