1U5D Signaling Protein date Jul 27, 2004
title Crystal Structure Of The Ph Domain Of Skap55
authors Y.Tang, K.D.Swanson, B.G.Neel, M.J.Eck
compound source
Molecule: Src Kinase-Associated Phosphoprotein Of 55 Kda
Chain: A, B, C, D
Fragment: Ph Domain (Residues 106-213)
Synonym: Skap55
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsskap55
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 1 21 1
R_factor 0.168 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.068 33.352 105.382 90.00 110.31 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1u5d.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (1u5d.pdb2.gz) 22 Kb
  • Biological Unit Coordinates (1u5d.pdb3.gz) 22 Kb
  • Biological Unit Coordinates (1u5d.pdb4.gz) 22 Kb
  • Biological Unit Coordinates (1u5d.pdb5.gz) 82 Kb
  • Biological Unit Coordinates (1u5d.pdb6.gz) 82 Kb
  • Biological Unit Coordinates (1u5d.pdb7.gz) 42 Kb
  • Biological Unit Coordinates (1u5d.pdb8.gz) 42 Kb
  • Biological Unit Coordinates (1u5d.pdb9.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 1U5D
  • CSU: Contacts of Structural Units for 1U5D
  • Likely Quarternary Molecular Structure file(s) for 1U5D
  • Structure Factors (640 Kb)
  • Retrieve 1U5D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U5D from S2C, [Save to disk]
  • Re-refined 1u5d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1U5D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U5D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1U5D, from MSDmotif at EBI
  • Fold representative 1u5d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u5d_C] [1u5d_A] [1u5d_D] [1u5d_B] [1u5d]
  • SWISS-PROT database: [Q86WV1]
  • Domain organization of [SKAP1_HUMAN] by SWISSPFAM
  • Domain found in 1U5D: [PH ] by SMART
  • Other resources with information on 1U5D
  • Community annotation for 1U5D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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