1UA2 Cell Cycle, Transferase date Aug 11, 2004
title Crystal Structure Of Human Cdk7
authors G.Lolli, E.D.Lowe, N.R.Brown, L.N.Johnson
compound source
Molecule: Cell Division Protein Kinase 7
Chain: A, B, C, D
Synonym: Cdk-Activating Kinase; Cak; Tfiih Basal Transcript Complex Kinase Subunit; 39 Kda Protein Kinase; P39 Mo15; St Serinethreonine Kinase Stk1; Serinethreonine Protein Kina
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk7
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pvl1392
Other_details: Sf21 Cells In Culture
symmetry Space Group: P 1 21 1
R_factor 0.213 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.501 191.635 75.794 90.00 94.40 90.00
method X-Ray Diffractionresolution 3.02 Å
ligand ATP, TPO enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe crystal structure of human CDK7 and its protein recognition properties., Lolli G, Lowe ED, Brown NR, Johnson LN, Structure (Camb) 2004 Nov;12(11):2067-79. PMID:15530371
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (1ua2.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (1ua2.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (1ua2.pdb3.gz) 49 Kb
  • Biological Unit Coordinates (1ua2.pdb4.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1UA2
  • CSU: Contacts of Structural Units for 1UA2
  • Likely Quarternary Molecular Structure file(s) for 1UA2
  • Structure Factors (299 Kb)
  • Retrieve 1UA2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UA2 from S2C, [Save to disk]
  • Re-refined 1ua2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UA2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UA2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UA2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ua2a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f1ua2, region A:148-323 [Jmol] [rasmolscript] [script source]
        - Domain d1u1ua2, region A:396-760 [Jmol] [rasmolscript] [script source]
        - Domain d1s1ua2, region A:4-429 [Jmol] [rasmolscript] [script source]
        - Domain d1ua2b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ua2c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ua2d_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1ua2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ua2] [1ua2_A] [1ua2_C] [1ua2_B] [1ua2_D]
  • SWISS-PROT database: [P50613]
  • Domain organization of [CDK7_HUMAN] by SWISSPFAM
  • Domain found in 1UA2: [S_TKc ] by SMART
  • Other resources with information on 1UA2
  • Community annotation for 1UA2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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