1UIR Transferase date Jul 18, 2003
title Crystal Structure Of Polyamine Aminopropyltransfease From Th Thermophilus
authors T.Ganbe, M.Ohnuma, T.Sato, T.Kumasaka, T.Oshima, N.Tanaka, Riken S Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Polyamine Aminopropyltransferase
Chain: A, B
Ec: 2.5.1.16, 2.5.1.22
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21c
symmetry Space Group: P 43 21 2
R_factor 0.199 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.775 87.775 190.825 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Transferase E.C.2.5.1.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures and enzymatic properties of a triamine/agmatine aminopropyltransferase from Thermus thermophilus., Ohnuma M, Ganbe T, Terui Y, Niitsu M, Sato T, Tanaka N, Tamakoshi M, Samejima K, Kumasaka T, Oshima T, J Mol Biol. 2011 May 20;408(5):971-86. Epub 2011 Mar 31. PMID:21458463
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (1uir.pdb1.gz) 217 Kb
  • Biological Unit Coordinates (1uir.pdb2.gz) 110 Kb
  • CSU: Contacts of Structural Units for 1UIR
  • Likely Quarternary Molecular Structure file(s) for 1UIR
  • Structure Factors (400 Kb)
  • Retrieve 1UIR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UIR from S2C, [Save to disk]
  • Re-refined 1uir structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UIR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UIR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1uira_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1uirb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1uir from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1uir] [1uir_A] [1uir_B]
  • SWISS-PROT database: [Q5SK28]
  • Domain organization of [SPEE_THET8] by SWISSPFAM
  • Other resources with information on 1UIR
  • Community annotation for 1UIR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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