1UTC Endocytosis date Dec 08, 2003
title Clathrin Terminal Domain Complexed With Tlpwdlwtt
authors A.E.Miele, P.R.Evans, D.J.Owen
compound source
Molecule: Clathrin Heavy Chain
Chain: A, B
Fragment: Terminal Domain, Residues 1-363
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Expression_system: Escherichia Coli Dh5[Alpha]
Expression_system_taxid: 668369
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t2

Molecule: Amphiphysin
Chain: P, Q
Fragment: W-Box, Residues 379-387
Engineered: Yes
Other_details: Peptide From Amphiphysin 1

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 41 21 2
R_factor 0.194 R_Free 0.253
length a length b length c angle alpha angle beta angle gamma
61.301 61.301 420.520 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
related structures by homologous chain: 1BPO
A, B

Primary referenceTwo distinct interaction motifs in amphiphysin bind two independent sites on the clathrin terminal domain beta-propeller., Miele AE, Watson PJ, Evans PR, Traub LM, Owen DJ, Nat Struct Mol Biol 2004 Mar;11(3):242-8. Epub 2004 Feb 15. PMID:14981508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (1utc.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (1utc.pdb2.gz) 62 Kb
  • CSU: Contacts of Structural Units for 1UTC
  • Likely Quarternary Molecular Structure file(s) for 1UTC
  • Structure Factors (278 Kb)
  • Retrieve 1UTC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UTC from S2C, [Save to disk]
  • Re-refined 1utc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UTC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UTC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UTC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1utca1, region A:331-355 [Jmol] [rasmolscript] [script source]
        - Domain d1utca2, region A:4-330 [Jmol] [rasmolscript] [script source]
        - Domain d1utcb2, region B:3-330 [Jmol] [rasmolscript] [script source]
        - Domain d1utcb1, region B:331-355 [Jmol] [rasmolscript] [script source]
  • Fold representative 1utc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1utc_Q] [1utc_B] [1utc_P] [1utc] [1utc_A]
  • SWISS-PROT database: [P49418] [P49951]
  • Domain organization of [AMPH_HUMAN] [CLH1_BOVIN] by SWISSPFAM
  • Other resources with information on 1UTC
  • Community annotation for 1UTC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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