1UX6 Cell Adhesion date Feb 19, 2004
title Structure Of A Thrombospondin C-Terminal Fragment Reveals A Calcium Core In The Type 3 Repeats
authors M.Kvansakul, J.C.Adams, E.Hohenester
compound source
Molecule: Thrombospondin-1
Chain: A
Fragment: Residues 831-1170
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: 293-Ebna
Expression_system_vector: Pcep-Pu
symmetry Space Group: H 3 2
R_factor 0.199 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
162.340 162.340 85.140 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA enzyme
note 1UX6 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a thrombospondin C-terminal fragment reveals a novel calcium core in the type 3 repeats., Kvansakul M, Adams JC, Hohenester E, EMBO J. 2004 Mar 24;23(6):1223-33. Epub 2004 Mar 11. PMID:15014436
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (1ux6.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1UX6
  • CSU: Contacts of Structural Units for 1UX6
  • Likely Quarternary Molecular Structure file(s) for 1UX6
  • Structure Factors (265 Kb)
  • Retrieve 1UX6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UX6 from S2C, [Save to disk]
  • Re-refined 1ux6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UX6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UX6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UX6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ux6a2, region A:813-936 [Jmol] [rasmolscript] [script source]
        - Domain d1ux6a1, region A:937-1152 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ux6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ux6_A] [1ux6]
  • SWISS-PROT database: [P07996]
  • Domain organization of [TSP1_HUMAN] by SWISSPFAM
  • Other resources with information on 1UX6
  • Community annotation for 1UX6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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