1V1K Transferase date Apr 16, 2004
title Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino Pyrimidine Cdk4 Inhibitor
authors J.F.Beattie, G.A.Breault, R.P.A.Ellston, S.Green, P.J.Jewsbury, C.J.Midgley, R.T.Naven, C.A.Minshull, R.A.Pauptit, J.A.Tucker, J
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.342 72.932 73.838 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand 3FP, ACE enzyme Transferase E.C.2.7.1.37 BRENDA
note 1V1K supersedes 1H06
related structures by homologous chain: 1OIQ, 1PXP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCyclin-dependent kinase 4 inhibitors as a treatment for cancer. Part 1: identification and optimisation of substituted 4,6-bis anilino pyrimidines., Beattie JF, Breault GA, Ellston RP, Green S, Jewsbury PJ, Midgley CJ, Naven RT, Minshull CA, Pauptit RA, Tucker JA, Pease JE, Bioorg Med Chem Lett. 2003 Sep 15;13(18):2955-60. PMID:12941311
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1v1k.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 1V1K
  • CSU: Contacts of Structural Units for 1V1K
  • Likely Quarternary Molecular Structure file(s) for 1V1K
  • Structure Factors (198 Kb)
  • Retrieve 1V1K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1V1K from S2C, [Save to disk]
  • Re-refined 1v1k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1V1K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1V1K
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1V1K, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1v1ka_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1v1k from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1v1k] [1v1k_A]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1V1K: [S_TKc ] by SMART
  • Other resources with information on 1V1K
  • Community annotation for 1V1K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science