OCA Atlas for 1V7M

1V7M

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

note

1V7M is a representative structure

related structures

by homologous chain: 1JHK, 1N8Z, 1OTS, 1YEH

Gene
Ontology

Chain	Function	Process	Component
X, V

Primary reference

Structure of the receptor-binding domain of human thrombopoietin determined by complexation with a neutralizing antibody fragment., Feese MD, Tamada T, Kato Y, Maeda Y, Hirose M, Matsukura Y, Shigematsu H, Muto T, Matsumoto A, Watarai H, Ogami K, Tahara T, Kato T, Miyazaki H, Kuroki R, Proc Natl Acad Sci U S A 2004 Feb 17;101(7):1816-21. Epub 2004 Feb 9. PMID:14769915

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]

Biological Unit Coordinates (1v7m.pdb1.gz) 90 Kb

Biological Unit Coordinates (1v7m.pdb2.gz) 91 Kb

CSU: Contacts of Structural Units for 1V7M

Likely Quarternary Molecular Structure file(s) for 1V7M

Structure Factors (521 Kb)

Retrieve 1V7M in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1V7M from S2C, [Save to disk]

Re-refined 1v7m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1V7M in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v7m] [1v7m_H] [1v7m_I] [1v7m_L] [1v7m_M] [1v7m_V] [1v7m_X]

SWISS-PROT database: [P40225]

Domains found in 1V7M: [IG_like] [IGv ] by SMART

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