OCA Atlas for 1V8P

1V8P

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

related structures

by homologous chain: 1V8O

Gene
Ontology

Chain	Function	Process	Component
F, A, H, K, G, J, E, C, I, L, D, B	nuclease activity exonuclease activity ribonuclease activity

Primary reference

Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease., Arcus VL, Backbro K, Roos A, Daniel EL, Baker EN, J Biol Chem 2004 Apr 16;279(16):16471-8. Epub 2004 Jan 20. PMID:14734548

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (257 Kb) [Save to disk]

Biological Unit Coordinates (1v8p.pdb1.gz) 85 Kb

Biological Unit Coordinates (1v8p.pdb2.gz) 87 Kb

Biological Unit Coordinates (1v8p.pdb3.gz) 85 Kb

LPC: Ligand-Protein Contacts for 1V8P

CSU: Contacts of Structural Units for 1V8P

Likely Quarternary Molecular Structure file(s) for 1V8P

Structure Factors (575 Kb)

Retrieve 1V8P in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1V8P from S2C, [Save to disk]

Re-refined 1v8p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1V8P in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1v8p] [1v8p_A] [1v8p_C] [1v8p_B] [1v8p_D] [1v8p_E] [1v8p_F] [1v8p_G] [1v8p_H] [1v8p_I] [1v8p_J] [1v8p_K] [1v8p_L]

SWISS-PROT database: [Q8ZUJ3]

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