1VA9 Cell Adhesion date Feb 13, 2004
title Solution Structure Of The Second Fniii Domain Of Dscaml1 Protein
authors X.R.Qin, F.Hayashi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Down Syndrome Cell Adhesion Molecule Like- Protein 1b;
Chain: A
Fragment: Fniii Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Kiaa1132
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030623-12
Other_details: Cell Free Protein Synthesis
methodSolution NMR

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (591 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1VA9
  • Retrieve 1VA9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VA9 from S2C, [Save to disk]
  • View 1VA9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VA9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VA9, from MSDmotif at EBI
  • Fold representative 1va9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1va9] [1va9_A]
  • SWISS-PROT database: [Q8TD84]
  • Domain organization of [DSCL1_HUMAN] by SWISSPFAM
  • Domain found in 1VA9: [FN3 ] by SMART
  • Other resources with information on 1VA9
  • Community annotation for 1VA9 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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