OCA Atlas for 1VA9

1VA9

Cell Adhesion

date

Feb 13, 2004

title

Solution Structure Of The Second Fniii Domain Of Dscaml1 Pro

authors

X.R.Qin, F.Hayashi, S.Yokoyama, Riken Structural Genomicsprot Initiative (Rsgi)

compound

source

Molecule: Down Syndrome Cell Adhesion Molecule Like-Protein
Chain: A
Fragment: Fniii Domain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Kiaa1132
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030623-12
Other_details: Cell Free Protein Synthesis

method

Solution NMR

Gene
Ontology

Chain	Function	Process	Component
A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (570 Kb) [Save to disk]

Biological Unit Coordinates (1va9.pdb1.gz) 29 Kb

CSU: Contacts of Structural Units for 1VA9

Retrieve 1VA9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1VA9 from S2C, [Save to disk]

View 1VA9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VA9

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1VA9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1va9] [1va9_A]

SWISS-PROT database: [Q8TD84]

Domain organization of [DSCL1_HUMAN] by SWISSPFAM

Domain found in 1VA9: [FN3 ] by SMART

Other resources with information on 1VA9

Community annotation for 1VA9 at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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