1VEG Structural Genomics, Unknown Function date Mar 31, 2004
title Solution Structure Of Rsgi Ruh-012, A Uba Domain From Mouse Cdna
authors T.Abe, H.Hirota, K.Izumi, M.Yoshida, T.Yamazaki, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Nedd8 Ultimate Buster-1
Chain: A
Fragment: Uba Domain
Synonym: Ny-Ren-18 Antigen, Nub1, Bs4 Protein
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Mus Musculus Adult Male Medulla Oblongata Cdna,
Riken Full-Length Enriched Library, Clone: 6330412f12
Product: Ny-Ren-18 Antigen, Full Insert Sequence
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030324-39
Other_details: Cell-Free Protein Synthesis System
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (396 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1VEG
  • Original NMR restraints for 1VEG from PDB
  • Retrieve 1VEG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VEG from S2C, [Save to disk]
  • View 1VEG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VEG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VEG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vega_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1veg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1veg_A] [1veg]
  • SWISS-PROT database: [P54729]
  • Domain organization of [NUB1_MOUSE] by SWISSPFAM
  • Domain found in 1VEG: [UBA ] by SMART
  • Other resources with information on 1VEG
  • Community annotation for 1VEG at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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