1VJ5 Hydrolase date Feb 03, 2004
title Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-Iodophen Complex
authors G.A.Gomez, C.Morisseau, B.D.Hammock, D.W.Christianson
compound source
Molecule: Epoxide Hydrolase 2, Cytoplasmic
Chain: A
Synonym: Hseh
Ec: 3.3.2.3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ephx2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
Expression_system_vector: Achseh1
symmetry Space Group: P 65 2 2
R_factor 0.217 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.510 93.510 245.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.35 Å
ligand CIU, MG, P6G, PO4 enzyme Hydrolase E.C.3.3.2.3 BRENDA
related structures by homologous chain: 1S8O
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of human epoxide hydrolase reveals mechanistic inferences on bifunctional catalysis in epoxide and phosphate ester hydrolysis(,)., Gomez GA, Morisseau C, Hammock BD, Christianson DW, Biochemistry 2004 Apr 27;43(16):4716-23. PMID:15096040
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (1vj5.pdb1.gz) 185 Kb
  • LPC: Ligand-Protein Contacts for 1VJ5
  • CSU: Contacts of Structural Units for 1VJ5
  • Likely Quarternary Molecular Structure file(s) for 1VJ5
  • Structure Factors (270 Kb)
  • Retrieve 1VJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VJ5 from S2C, [Save to disk]
  • Re-refined 1vj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VJ5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VJ5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vj5a1, region A:2-225 [Jmol] [rasmolscript] [script source]
        - Domain d1vj5a2, region A:226-547 [Jmol] [rasmolscript] [script source]
  • Fold representative 1vj5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vj5] [1vj5_A]
  • SWISS-PROT database: [P34913]
  • Domain organization of [HYES_HUMAN] by SWISSPFAM
  • Other resources with information on 1VJ5
  • Community annotation for 1VJ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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