1VJ5 Hydrolase date Feb 03, 2004
title Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-Iodophen Complex
authors G.A.Gomez, C.Morisseau, B.D.Hammock, D.W.Christianson
compound source
Molecule: Epoxide Hydrolase 2, Cytoplasmic
Chain: A
Synonym: Hseh
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ephx2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
Expression_system_vector: Achseh1
symmetry Space Group: P 65 2 2
R_factor 0.217 R_Free 0.266
length a length b length c angle alpha angle beta angle gamma
93.510 93.510 245.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.35 Å
ligand CIU, MG, P6G, PO4 enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1S8O

Primary referenceStructure of human epoxide hydrolase reveals mechanistic inferences on bifunctional catalysis in epoxide and phosphate ester hydrolysis(,)., Gomez GA, Morisseau C, Hammock BD, Christianson DW, Biochemistry 2004 Apr 27;43(16):4716-23. PMID:15096040
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (1vj5.pdb1.gz) 185 Kb
  • LPC: Ligand-Protein Contacts for 1VJ5
  • CSU: Contacts of Structural Units for 1VJ5
  • Likely Quarternary Molecular Structure file(s) for 1VJ5
  • Structure Factors (270 Kb)
  • Retrieve 1VJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VJ5 from S2C, [Save to disk]
  • Re-refined 1vj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VJ5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VJ5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vj5a1, region A:2-225 [Jmol] [rasmolscript] [script source]
        - Domain d1vj5a2, region A:226-547 [Jmol] [rasmolscript] [script source]
  • Fold representative 1vj5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vj5] [1vj5_A]
  • SWISS-PROT database: [P34913]
  • Domain organization of [HYES_HUMAN] by SWISSPFAM
  • Other resources with information on 1VJ5
  • Community annotation for 1VJ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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