1VPZ Rna Binding Protein date Nov 24, 2004
title Crystal Structure Of A Putative Carbon Storage Regulator Pro (Csra, Pa0905) From Pseudomonas Aeruginosa At 2.05 A Resolu
authors Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Carbon Storage Regulator Homolog
Chain: A, B
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Csra
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: C 2 2 21
R_factor 0.218 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.066 56.669 98.533 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand MSE enzyme
related structures by homologous chain: 1Y00
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the global regulatory protein CsrA from Pseudomonas putida at 2.05 A resolution reveals a new fold., Rife C, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA, Proteins. 2005 Nov 1;61(2):449-53. PMID:16104018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (1vpz.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 1VPZ
  • CSU: Contacts of Structural Units for 1VPZ
  • Likely Quarternary Molecular Structure file(s) for 1VPZ
  • Structure Factors (882 Kb)
  • Retrieve 1VPZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VPZ from S2C, [Save to disk]
  • Re-refined 1vpz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VPZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VPZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VPZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vpza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1vpzb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1vpz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vpz_A] [1vpz] [1vpz_B]
  • SWISS-PROT database: [O69078]
  • Domain organization of [CSRA_PSEAE] by SWISSPFAM
  • Other resources with information on 1VPZ
  • Community annotation for 1VPZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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