1VYH Hydrolase date Apr 30, 2004
title Paf-Ah Holoenzyme: Lis1alfa2
authors C.Tarricone, F.Perrina, S.Monzani, L.Massimiliano, S.Knapp, L.H.Tsai, Z.S.Derewenda, A.Musacchio
compound source
Molecule: Platelet-Activating Factor Acetylhydrolase Ib Alpha Subunit;
Chain: C, D, G, H, K, L, O, P, S, T
Fragment: C-Term Beta-Propeller, Residues 1-229
Synonym: Paf Acetylhydrolase 45 Kda Subunit, Paf-Ah 45 Kda Subunit, Paf-Ah Alpha, Pafah Alpha, Lissencephaly-1 Protein, Lis-1, Paf-Ah 45 Kd Subunit;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Organ: Brain
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac-Htb

Molecule: Platelet-Activating Factor Acetylhydrolase Ib Beta Subunit;
Chain: A, B, E, F, I, J, M, N, Q, R
Synonym: Platelet-Activating Factor Acetylhydrolase, Paf Acetylhydrolase 30 Kda Subunit, Paf-Ah 30 Kda Subunit, Paf-Ah Beta Subunit, Pafah Beta Subunit;
Ec: 3.1.1.47
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pgex6p1
symmetry Space Group: P 1 21 1
R_factor 0.264 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
205.770 101.220 246.130 90.00 98.06 90.00
method X-Ray Diffractionresolution 3.4 Å
ligand
enzyme Hydrolase E.C.3.1.1.47 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, N, E, Q, M, A, J, B, R, I


S, T, K, C, L, O, P, H, D, G
  • chemical synaptic transmissi...
  • retrograde axonal transport

  • Primary referenceCoupling PAF signaling to dynein regulation: structure of LIS1 in complex with PAF-acetylhydrolase., Tarricone C, Perrina F, Monzani S, Massimiliano L, Kim MH, Derewenda ZS, Knapp S, Tsai LH, Musacchio A, Neuron. 2004 Dec 2;44(5):809-21. PMID:15572112
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (812 Kb) [Save to disk]
  • Biological Unit Coordinates (1vyh.pdb1.gz) 171 Kb
  • Biological Unit Coordinates (1vyh.pdb2.gz) 171 Kb
  • Biological Unit Coordinates (1vyh.pdb3.gz) 171 Kb
  • Biological Unit Coordinates (1vyh.pdb4.gz) 171 Kb
  • Biological Unit Coordinates (1vyh.pdb5.gz) 171 Kb
  • CSU: Contacts of Structural Units for 1VYH
  • Likely Quarternary Molecular Structure file(s) for 1VYH
  • Structure Factors (1085 Kb)
  • Retrieve 1VYH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VYH from S2C, [Save to disk]
  • Re-refined 1vyh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VYH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VYH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VYH, from MSDmotif at EBI
  • Fold representative 1vyh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vyh_S] [1vyh_C] [1vyh_J] [1vyh_R] [1vyh_N] [1vyh_T] [1vyh_M] [1vyh_E] [1vyh_P] [1vyh_H] [1vyh_I] [1vyh_L] [1vyh_G] [1vyh_Q] [1vyh_F] [1vyh_A] [1vyh_D] [1vyh_B] [1vyh_K] [1vyh_O] [1vyh]
  • SWISS-PROT database: [P63005] [P68402]
  • Domain organization of [LIS1_MOUSE] [PA1B2_HUMAN] by SWISSPFAM
  • Domains found in 1VYH: [LisH] [WD40 ] by SMART
  • Other resources with information on 1VYH
  • Community annotation for 1VYH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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