OCA Atlas for 1VYJ

1VYJ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

note

1VYJ is a representative structure

related structures

by homologous chain: 1U76, 1UL1

Gene
Ontology

Chain	Function	Process	Component
E, G, C, K, A, I

Primary reference

Structural and biochemical studies of human proliferating cell nuclear antigen complexes provide a rationale for cyclin association and inhibitor design., Kontopidis G, Wu SY, Zheleva DI, Taylor P, McInnes C, Lane DP, Fischer PM, Walkinshaw MD, Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):1871-6. Epub 2005 Jan 28. PMID:15681588

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (267 Kb) [Save to disk]

Biological Unit Coordinates (1vyj.pdb1.gz) 133 Kb

Biological Unit Coordinates (1vyj.pdb2.gz) 133 Kb

CSU: Contacts of Structural Units for 1VYJ

Likely Quarternary Molecular Structure file(s) for 1VYJ

Structure Factors (963 Kb)

Retrieve 1VYJ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1VYJ from S2C, [Save to disk]

Re-refined 1vyj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VYJ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vyj] [1vyj_A] [1vyj_B] [1vyj_C] [1vyj_D] [1vyj_E] [1vyj_F] [1vyj_G] [1vyj_H] [1vyj_I] [1vyj_J] [1vyj_K] [1vyj_L]

SWISS-PROT database: [P12004]

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