1W5H Four Helix Bundle date Aug 06, 2004
title An Anti-Parallel Four Helix Bundle.
authors M.K.Yadav, L.J.Leman, C.D.Stout, M.R.Ghadiri
compound source
Molecule: General Control Protein Gcn4
Chain: A, B
Synonym: Amino Acid Biosynthesis Regulatory Protein, Pli E2
Engineered: Yes
Mutation: Yes
Other_details: Peptide Is Capped With Para Acetamido Benzoi
Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 42 21 2
R_factor 0.280 R_Free 0.344
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.238 35.238 104.647 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
related structures by homologous chain: 1NKN, 1SWI
Primary referenceCoiled coils at the edge of configurational heterogeneity. Structural analyses of parallel and antiparallel homotetrameric coiled coils reveal configurational sensitivity to a single solvent-exposed amino acid substitution., Yadav MK, Leman LJ, Price DJ, Brooks CL 3rd, Stout CD, Ghadiri MR, Biochemistry. 2006 Apr 11;45(14):4463-73. PMID:16584182
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (1w5h.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 1W5H
  • Likely Quarternary Molecular Structure file(s) for 1W5H
  • Structure Factors (35 Kb)
  • Retrieve 1W5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W5H from S2C, [Save to disk]
  • Re-refined 1w5h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W5H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1W5H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1w5ha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1w5hb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1w5h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w5h_A] [1w5h_B] [1w5h]
  • SWISS-PROT database: [P03069]
  • Domain organization of [GCN4_YEAST] by SWISSPFAM
  • Other resources with information on 1W5H
  • Community annotation for 1W5H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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