1W6U Oxidoreductase date Aug 24, 2004
title Structure Of Human Decr Ternary Complex
authors M.S.Alphey, E.Byres, D.Li, W.N.Hunter
compound source
Molecule: 2,4-Dienoyl-Coa Reductase, Mitochondrial Precursor;
Chain: A, B, C, D
Synonym: 2,4-Dienoyl-Coa Reductase [Nadph], 4-Enoyl-Coa Reductase [Nadph];
Ec: 1.3.1.34
Engineered: Yes
Other_details: Cofactor (N) Nadp Substrate (S) 2,4- Hexadienoyl-Coa
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organelle: Mitochondrial
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Plm1
symmetry Space Group: P 1 21 1
R_factor 0.227 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.281 131.658 70.849 90.00 92.64 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand HXC, NAP enzyme Oxidoreductase E.C.1.3.1.34 BRENDA
related structures by homologous chain: 1W73
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure and reactivity of human mitochondrial 2,4-dienoyl-CoA reductase: enzyme-ligand interactions in a distinctive short-chain reductase active site., Alphey MS, Yu W, Byres E, Li D, Hunter WN, J Biol Chem. 2005 Jan 28;280(4):3068-77. Epub 2004 Nov 6. PMID:15531764
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (1w6u.pdb1.gz) 192 Kb
  • LPC: Ligand-Protein Contacts for 1W6U
  • CSU: Contacts of Structural Units for 1W6U
  • Likely Quarternary Molecular Structure file(s) for 1W6U
  • Structure Factors (1546 Kb)
  • Retrieve 1W6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W6U from S2C, [Save to disk]
  • Re-refined 1w6u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W6U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1W6U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1w6ua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1w6ub_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1w6uc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1w6ud_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1w6u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w6u_C] [1w6u] [1w6u_A] [1w6u_B] [1w6u_D]
  • SWISS-PROT database: [Q16698]
  • Domain organization of [DECR_HUMAN] by SWISSPFAM
  • Other resources with information on 1W6U
  • Community annotation for 1W6U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science