1W6V Hydrolase date Aug 24, 2004
title Solution Structure Of The Dusp Domain Of Husp15
authors R.D.De Jong, E.Ab, T.Diercks, V.Truffault, M.Daniels, R.Kaptein, G.E.Folkers
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 15
Chain: A
Fragment: Dusp Domain, Residues 1-120
Synonym: Ubiquitin Thiolesterase 15, Ubiquitin-Specific Processing Protease 15, Ubiquitinating Enzyme 15, Unph-2, Unph4;
Ec: 3.1.2.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet15b
Other_details: Self Made Cdna Library Of Multiple Human Carcinoma Cell Lines
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.1.2.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the human ubiquitin-specific protease 15 DUSP domain., de Jong RN, Ab E, Diercks T, Truffault V, Daniels M, Kaptein R, Folkers GE, J Biol Chem. 2006 Feb 24;281(8):5026-31. Epub 2005 Nov 18. PMID:16298993
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (404 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1W6V
  • Original NMR restraints for 1W6V from PDB
  • Retrieve 1W6V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W6V from S2C, [Save to disk]
  • View 1W6V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W6V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1W6V, from MSDmotif at EBI
  • Fold representative 1w6v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w6v] [1w6v_A]
  • SWISS-PROT database: [Q9Y4E8]
  • Domain organization of [UBP15_HUMAN] by SWISSPFAM
  • Domain found in 1W6V: [DUSP ] by SMART
  • Other resources with information on 1W6V
  • Community annotation for 1W6V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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