1WDZ Signaling Protein date May 21, 2004
title Crystal Structure Of Rcb Domain Of Irsp53
authors K.Murayama, S.Suetsugu, A.Seto, M.Shirouzu, T.Takenawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Insulin Receptor Substrate P53
Chain: A, B
Fragment: N-Terminal Domain
Synonym: Irsp53
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.297
length a length b length c angle alpha angle beta angle gamma
60.833 69.258 68.715 90.00 110.12 90.00
method X-Ray Diffractionresolution 2.63 Å
related structures by homologous chain: 1Y2O
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (1wdz.pdb1.gz) 75 Kb
  • CSU: Contacts of Structural Units for 1WDZ
  • Likely Quarternary Molecular Structure file(s) for 1WDZ
  • Retrieve 1WDZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WDZ from S2C, [Save to disk]
  • View 1WDZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WDZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WDZ, from MSDmotif at EBI
  • Fold representative 1wdz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wdz] [1wdz_A] [1wdz_B]
  • SWISS-PROT database: [Q9UQB8]
  • Domain organization of [BAIP2_HUMAN] by SWISSPFAM
  • Other resources with information on 1WDZ
  • Community annotation for 1WDZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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