1WMS Protein Transport date Jul 16, 2004
title High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target
authors L.Chen, E.Digiammarino, X.E.Zhou, Y.Wang, D.Toh, T.W.Hodge, E.J.Meehan
compound source
Molecule: Ras-Related Protein Rab-9a
Chain: A, B
Fragment: C-Terminal Truncated
Synonym: Rab-9, Rab9
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab9
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Rab9(1-177)
symmetry Space Group: P 1
length a length b length c angle alpha angle beta angle gamma
38.400 45.620 51.220 99.75 107.17 101.84
method X-Ray Diffractionresolution 1.25 Å
ligand GDP enzyme
related structures by homologous chain: 1S8F
A, B

Primary referenceHigh Resolution Crystal Structure of Human Rab9 GTPase: A NOVEL ANTIVIRAL DRUG TARGET., Chen L, DiGiammarino E, Zhou XE, Wang Y, Toh D, Hodge TW, Meehan EJ, J Biol Chem 2004 Sep 17;279(38):40204-40208. Epub 2004 Jul 19. PMID:15263003
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (1wms.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (1wms.pdb2.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1WMS
  • CSU: Contacts of Structural Units for 1WMS
  • Likely Quarternary Molecular Structure file(s) for 1WMS
  • Structure Factors (685 Kb)
  • Retrieve 1WMS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WMS from S2C, [Save to disk]
  • Re-refined 1wms structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WMS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WMS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1WMS 1WMSA 1WMSB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1WMS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wmsa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1wmsb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1wms from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wms_A] [1wms_B] [1wms]
  • SWISS-PROT database: [P51151]
  • Domain organization of [RAB9A_HUMAN] by SWISSPFAM
  • Domain found in 1WMS: [RAB ] by SMART
  • Other resources with information on 1WMS
  • Community annotation for 1WMS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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